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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_277580_277759_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

277580 - 277759

Intron Length:

180

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

GGGTCCCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGTTAAT

U12 Branch Point Sequence:

CCTCGGTTAATG

Flanking Amino Acid:

SKLLVPDLASKPQPSPGGQS

Intron Amino Acid Position:

248

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

68.2

Major BPS

66.6

0.41

1.4

69.7

44.2

Major PPT

0.27

0.9

51.1

39.3

Minor 5ss

33.1

-1.9

3.2

43.9

43.7

Minor BPS

-0.6

2.4

47.74

46.2

Associated Gene:

Gene:

GLI1

Ensembl Gene ID:

ENSAPLG00000024305

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042248

273743 - 281564

7822