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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_301939_302027_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
301939 - 302027
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TCATCTGGGACT
Flanking Amino Acid:
GLPAPWGAEQEGPSETAPLW
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.5
38.7
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
79.7
0.67
0.7
74.5
23.7
Minor 5ss
30.3
-2.3
3.3
38
46.8
Minor BPS
47.2
-0.1
2.2
68.03
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001411
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001402
300990 - 302441
1452