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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_303032_303135_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
303032 - 303135
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCCC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTACAC
U12 Branch Point Sequence:
TGTCCTTCCACA
Flanking Amino Acid:
QPEDLTVVRQAKPTPPASAP
Intron Amino Acid Position:
735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.1
69.7
41.3
Major BPS
49.2
-0
1.1
58.3
36.8
Major PPT
78
0.63
0.8
72.3
32.4
Minor 5ss
41
-1
2.8
54.5
42.6
Minor BPS
49.2
-0
2
65.91
40.4

Associated Gene:

Gene:
MARS1
Ensembl Gene ID:
ENSAPLG00000014821
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015472
302578 - 307621
5044