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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_303163_303253_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
303163 - 303253
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCTTTCCTCACT
Flanking Amino Acid:
ALRKRFGGGQPEDLTVVRQA
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
83.1
0.75
0.7
76
32.5
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
56.3
0.28
2.1
79.84
42.4

Associated Gene:

Gene:
MARS1
Ensembl Gene ID:
ENSAPLG00000014821
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015472
302578 - 307621
5044