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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_304019_304089_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
304019 - 304089
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCATCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TGCCCCTCCATC
Flanking Amino Acid:
LLNNLGNFINRAGMFVCKFF
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.1
37.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
70.8
0.47
0.8
61.5
33.8
Minor 5ss
25.6
-2.8
3.1
31.9
42.9
Minor BPS
46.8
-0.2
2
56.76
42

Associated Gene:

Gene:
MARS1
Ensembl Gene ID:
ENSAPLG00000014821
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034844
302578 - 307621
5044
ENSAPLT00000015472
302578 - 307621
5044