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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_312167_312975_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
312167 - 312975
Intron Length:
809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGCC
5'SS Class:
major
3'SS Sequence:
CTCACCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTTTCCTCACCC
Flanking Amino Acid:
EEHFNIRDLQINVEHLTEKM
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
65.5
34.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
67.9
0.4
0.8
58
33
Minor 5ss
23.6
-3
3.5
32.2
42.8
Minor BPS
68.6
0.56
1.8
82.89
37.2

Associated Gene:

Gene:
PFKM
Ensembl Gene ID:
ENSAPLG00000026256
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043054
311227 - 321259
10033