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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_313746_313986_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
313746 - 313986
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCAAAT
U12 Branch Point Sequence:
CCCCCCCAAATT
Flanking Amino Acid:
DGFEGLAFGKVEEISWERVG
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.4
38.7
Major BPS
52.4
0.06
1.1
58.8
34.5
Major PPT
74.4
0.55
0.7
65.8
30.3
Minor 5ss
25.2
-2.9
3.2
30
43.6
Minor BPS
44.7
-0.3
2
57.26
45.9

Associated Gene:

Gene:
PFKM
Ensembl Gene ID:
ENSAPLG00000026256
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043054
311227 - 321259
10033