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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_314134_314205_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
314134 - 314205
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TCGCCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAA
U12 Branch Point Sequence:
CCCCCCTAAAAC
Flanking Amino Acid:
LAHIRPPSTKSGYTLAVLNV
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
60.4
0.26
1.1
61.5
32.5
Major PPT
67.7
0.4
0.8
58.1
33.1
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
47.7
-0.1
1.8
52.42
44.9

Associated Gene:

Gene:
PFKM
Ensembl Gene ID:
ENSAPLG00000026256
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043054
311227 - 321259
10033