About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_314270_314433_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
314270 - 314433
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTATTT
Flanking Amino Acid:
RFDDALKLRGRSFQNNWNVY
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
66.2
39.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
35.7
-1.6
2.9
45.4
42.5
Minor BPS
63.8
0.51
1.8
83.73
37.1

Associated Gene:

Gene:
PFKM
Ensembl Gene ID:
ENSAPLG00000026256
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043054
311227 - 321259
10033