Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_315758_315852_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

315758 - 315852

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGTGGG

5'SS Class:

major

3'SS Sequence:

CTCCGTCTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCCCAT

U12 Branch Point Sequence:

CATCCCTGAGCC

Flanking Amino Acid:

KPITSDDIKNLVVKRLGYDT

Intron Amino Acid Position:

284

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.62

1.3

67.1

44.6

Major BPS

50.9

0.02

1.3

60.4

37.5

Major PPT

78.6

0.64

0.8

72.2

32.4

Minor 5ss

33.5

-1.9

3.2

39.4

39.7

Minor BPS

51.5

0.03

1.8

62.47

42.3

Associated Gene:

Gene:

PFKM

Ensembl Gene ID:

ENSAPLG00000026256

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043054

311227 - 321259

10033