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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_322178_322422_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
322178 - 322422
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCATCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGCTGTCTAATC
Flanking Amino Acid:
KALALQLQSQRLQEHSVQDL
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
76.3
0.59
0.9
70.3
35.3
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
47.2
-0.2
2
59.1
40.6

Associated Gene:

Gene:
SENP1
Ensembl Gene ID:
ENSAPLG00000010680
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011148
320877 - 331170
10294