About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_322934_323319_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
322934 - 323319
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
AATTTCTTAGCG
Flanking Amino Acid:
LNNLNWLNDEIINFYMNLLM
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
90.5
0.91
0.6
84.4
30.5
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
63.8
0.29
1.6
66.86
40.7

Associated Gene:

Gene:
SENP1
Ensembl Gene ID:
ENSAPLG00000010680
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011148
320877 - 331170
10294