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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_324465_329948_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
324465 - 329948
Intron Length:
5484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
CTCGTTCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAG
U12 Branch Point Sequence:
GTTCCTCTAAGT
Flanking Amino Acid:
GINSEACRILLQYLKQESLD
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
72.2
32.2
Major BPS
58.2
0.2
1.5
67.3
37.8
Major PPT
78.9
0.65
0.8
72.2
32.6
Minor 5ss
33.2
-1.9
2.8
42.6
38.5
Minor BPS
52.3
0.15
2
74.99
41.5

Associated Gene:

Gene:
SENP1
Ensembl Gene ID:
ENSAPLG00000010680
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011148
320877 - 331170
10294