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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_330034_330423_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
330034 - 330423
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATGAC
U12 Branch Point Sequence:
CGGGGAATGACG
Flanking Amino Acid:
GWSLLSKKSQEIPQQMNGSD
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.8
38.1
Major BPS
49.7
-0
1.2
43.4
39.2
Major PPT
76.9
0.61
0.8
72.2
32.4
Minor 5ss
37
-1.5
3.2
48.2
47.9
Minor BPS
34.4
-1.3
2.1
32.89
40.6

Associated Gene:

Gene:
SENP1
Ensembl Gene ID:
ENSAPLG00000010680
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011148
320877 - 331170
10294