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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_379879_380064_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

379879 - 380064

Intron Length:

186

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCTTGCT

5'SS Class:

major

3'SS Sequence:

CCTTCATTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAA

U12 Branch Point Sequence:

CCTTCCTTCATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

67.9

37.1

Major BPS

76.9

0.67

0.8

77.7

26.1

Major PPT

0.5

65.3

40.2

Minor 5ss

28.9

-2.4

3.3

41.9

44.7

Minor BPS

66.8

0.61

1.8

79.08

43.9

Associated Gene:

Gene:

VDR

Ensembl Gene ID:

ENSAPLG00000005087

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043289

379129 - 410614

31486