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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_380231_393323_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

380231 - 393323

Intron Length:

13093

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

CGTGTCATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTCAT

U12 Branch Point Sequence:

CTGTCTCAGACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.4

0.7

83.9

30.3

Major BPS

67.1

0.42

1.4

71.4

45.1

Major PPT

73.7

0.53

66.2

39.5

Minor 5ss

38.4

-1.3

2.9

48.7

47.5

Minor BPS

47.2

-0.1

67.05

44.4

Associated Gene:

Gene:

VDR

Ensembl Gene ID:

ENSAPLG00000005087

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043289

379129 - 410614

31486