Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_393396_394717_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

393396 - 394717

Intron Length:

1322

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATGCT

5'SS Class:

strong_major

3'SS Sequence:

TCTGCTCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATAAAT

U12 Branch Point Sequence:

CTGCAAATAAAT

Flanking Amino Acid:

RQDMAYLPDPDMETVAASTS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

81.2

30.6

Major BPS

65.7

0.39

71.3

30.3

Major PPT

74.5

0.55

0.8

65.7

Minor 5ss

34.7

-1.7

3.3

50.4

Minor BPS

41.4

-0.5

58.36

43.5

Associated Gene:

Gene:

VDR

Ensembl Gene ID:

ENSAPLG00000005087

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043289

379129 - 410614

31486

ENSAPLT00000005263

391626 - 410614

18989