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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_394384_394717_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
394384 - 394717
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGTGACCT
5'SS Class:
major
3'SS Sequence:
TCTGCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
CTGCAAATAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1
58.1
40.6
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
74.5
0.55
0.8
65.7
36
Minor 5ss
35.7
-1.6
3.1
49.8
46
Minor BPS
41.4
-0.5
2
58.36
43.5

Associated Gene:

Gene:
VDR
Ensembl Gene ID:
ENSAPLG00000005087
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034898
394079 - 410614
16536