Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_394869_400262_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

394869 - 400262

Intron Length:

5394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGAA

5'SS Class:

strong_major

3'SS Sequence:

TGCTCCTCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACAGAG

U12 Branch Point Sequence:

AGTTGGGTGACC

Flanking Amino Acid:

MTCEGCKGFFRRSMKRKAMF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

73.7

32.5

Major BPS

43.5

-0.4

1.3

38.4

32.3

Major PPT

78.6

0.64

0.8

69.6

36.8

Minor 5ss

30.2

-2.3

3.3

37.1

47.5

Minor BPS

39.6

-0.8

2.8

56.32

42.6

Associated Gene:

Gene:

VDR

Ensembl Gene ID:

ENSAPLG00000005087

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005263

391626 - 410614

18989

ENSAPLT00000043289

379129 - 410614

31486

ENSAPLT00000034898

394079 - 410614

16536