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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_400394_407131_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

400394 - 407131

Intron Length:

6738

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTGAGTACG

5'SS Class:

major

3'SS Sequence:

CCCGGCCCTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAC

U12 Branch Point Sequence:

CTGTTTGTAACG

Flanking Amino Acid:

RCVDIGMMKEFILTDEEVQR

Intron Amino Acid Position:

137

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.7

0.47

1.1

64.4

41.4

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

66.1

0.36

0.9

57.4

33.4

Minor 5ss

32.6

-2

2.7

35.7

40.4

Minor BPS

49.3

-0.1

2.1

57.67

44.9

Associated Gene:

Gene:

VDR

Ensembl Gene ID:

ENSAPLG00000005087

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043289

379129 - 410614

31486

ENSAPLT00000034898

394079 - 410614

16536

ENSAPLT00000005263

391626 - 410614

18989