Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_407317_407670_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

407317 - 407670

Intron Length:

354

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAGGTGAG

5'SS Class:

major

3'SS Sequence:

CTCTCTCCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTCAC

U12 Branch Point Sequence:

CGTTCCTCACGC

Flanking Amino Acid:

PTYSDFTKFRPPVRSRSSSR

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

1.1

63.2

43.4

Major BPS

72.4

0.56

73.5

32.5

Major PPT

82.4

0.73

0.7

76.8

25.2

Minor 5ss

30.2

-2.3

3.3

30.8

43.2

Minor BPS

46.9

-0.2

2.1

59.01

45.8

Associated Gene:

Gene:

VDR

Ensembl Gene ID:

ENSAPLG00000005087

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043289

379129 - 410614

31486

ENSAPLT00000034898

394079 - 410614

16536

ENSAPLT00000005263

391626 - 410614

18989