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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_407795_408099_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

407795 - 408099

Intron Length:

305

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTACCGCTC

5'SS Class:

weak_major

3'SS Sequence:

ATTCCCCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAA

U12 Branch Point Sequence:

GTCCTCTGAATT

Flanking Amino Acid:

FGSDAFSTFPESVEPPMFSN

Intron Amino Acid Position:

240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.9

0.16

1.3

50.2

46.5

Major BPS

69.8

0.49

37.5

Major PPT

72.5

0.51

0.8

33.7

Minor 5ss

40.3

-1.1

3.6

59.4

45.5

Minor BPS

58.1

0.33

1.4

70.72

40.3

Associated Gene:

Gene:

VDR

Ensembl Gene ID:

ENSAPLG00000005087

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034898

394079 - 410614

16536

ENSAPLT00000005263

391626 - 410614

18989

ENSAPLT00000043289

379129 - 410614

31486