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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_408272_408779_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

408272 - 408779

Intron Length:

508

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGATT

5'SS Class:

strong_major

3'SS Sequence:

CGCTGCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAG

U12 Branch Point Sequence:

CAGCTCTCAGCT

Flanking Amino Acid:

IGFAKMIPGFRDLTAEDQIA

Intron Amino Acid Position:

297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

87.7

Major BPS

58.6

0.22

1.5

38.9

Major PPT

69.9

0.45

0.9

61.8

34.9

Minor 5ss

32.8

-2

3.3

47.8

47.9

Minor BPS

-0.2

1.8

58.55

44.3

Associated Gene:

Gene:

VDR

Ensembl Gene ID:

ENSAPLG00000005087

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043289

379129 - 410614

31486

ENSAPLT00000034898

394079 - 410614

16536

ENSAPLT00000005263

391626 - 410614

18989