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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_408932_410068_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

408932 - 410068

Intron Length:

1137

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGCC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCCCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

TGGGTGCTGACG

Flanking Amino Acid:

FKYKVSDVTQAGHSMDLLEP

Intron Amino Acid Position:

348

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.9

33.4

Major BPS

66.3

0.4

1.1

41.8

Major PPT

74.2

0.54

0.7

65.3

30.5

Minor 5ss

-2.9

3.3

32.7

42.5

Minor BPS

38.5

-1

2.3

42.94

42.8

Associated Gene:

Gene:

VDR

Ensembl Gene ID:

ENSAPLG00000005087

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043289

379129 - 410614

31486

ENSAPLT00000034898

394079 - 410614

16536

ENSAPLT00000005263

391626 - 410614

18989