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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_410186_410271_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
410186 - 410271
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCTCC
5'SS Class:
weak_major
3'SS Sequence:
TCACCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTCTTTTCACCT
Flanking Amino Acid:
LLMAICILSPDRPGVQDTSL
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.3
57.6
42.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.6
0.46
0.8
61.8
34.6
Minor 5ss
49.3
-0
2.8
68.6
42.5
Minor BPS
48.7
-0
1.8
66.64
44.9

Associated Gene:

Gene:
VDR
Ensembl Gene ID:
ENSAPLG00000005087
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043289
379129 - 410614
31486
ENSAPLT00000034898
394079 - 410614
16536
ENSAPLT00000005263
391626 - 410614
18989