Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_418626_419376_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

418626 - 419376

Intron Length:

751

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGCTCCCG

5'SS Class:

major

3'SS Sequence:

TCCCCCCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCACAC

U12 Branch Point Sequence:

GGCCCCGTCACA

Flanking Amino Acid:

VEEAIRRRFEVDASGAVLEL

Intron Amino Acid Position:

241

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.8

0.28

1.1

46.3

43.6

Major BPS

1.2

60.7

37.6

Major PPT

71.3

0.48

0.7

64.4

24.2

Minor 5ss

31.7

-2.1

3.1

39.9

45.6

Minor BPS

-0.4

2.3

54.17

44.1

Associated Gene:

Gene:

C12orf10

Ensembl Gene ID:

ENSAPLG00000030654

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027575

416430 - 420842

4413