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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_423995_424248_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
423995 - 424248
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TCCTGCTCACGT
Flanking Amino Acid:
VLAATPSAVFRVWEAQMWTC
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
79.1
0.65
0.8
69.8
36.7
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
41.5
-0.5
2.3
59.08
50

Associated Gene:

Gene:
AAAS
Ensembl Gene ID:
ENSAPLG00000029097
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031668
419598 - 428801
9204
ENSAPLT00000024037
419598 - 428801
9204
ENSAPLT00000020282
419598 - 428801
9204