Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_10019_10329_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10019 - 10329

Intron Length:

311

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TGTTCCTCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCCAG

U12 Branch Point Sequence:

TGGACCCCAGCG

Flanking Amino Acid:

DYIPYPSIDEILDKGSPYPL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

74.9

35.3

Major BPS

43.3

-0.4

1.6

52.1

45.2

Major PPT

78.2

0.63

0.8

69.9

36.6

Minor 5ss

28.5

-2.5

3.4

40.8

45.6

Minor BPS

41.1

-0.8

2.1

46.51

45.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005197

Chromosome:

PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043527

6645 - 22036

15392

ENSAPLT00000021154

6645 - 23014

16370

ENSAPLT00000019806

1222 - 22036

20815

ENSAPLT00000005432

6645 - 23369

16725