Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_11515_11701_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11515 - 11701

Intron Length:

187

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACCGGC

5'SS Class:

major

3'SS Sequence:

CCCTTGCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGATGAC

U12 Branch Point Sequence:

GGGCTGATGACA

Flanking Amino Acid:

KLPSIPQIAKAFCDDASGLK

Intron Amino Acid Position:

179

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

1.2

61.5

44.8

Major BPS

59.6

0.24

1.2

51.4

43.9

Major PPT

73.1

0.52

0.8

64.2

36.7

Minor 5ss

42.2

-0.9

3.3

59.3

45.5

Minor BPS

39.5

-0.8

2.1

45.83

36.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005197

Chromosome:

PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021154

6645 - 23014

16370

ENSAPLT00000019806

1222 - 22036

20815

ENSAPLT00000005432

6645 - 23369

16725

ENSAPLT00000043527

6645 - 22036

15392