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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_13814_14394_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13814 - 14394
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCGGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTCCCTGAATT
Flanking Amino Acid:
GDTITLQDFKGFRGGLDVSH
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
73.8
0.54
0.9
65.3
41.1
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
70.3
0.72
1.4
82.5
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005197
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005432
6645 - 23369
16725
ENSAPLT00000043527
6645 - 22036
15392
ENSAPLT00000021154
6645 - 23014
16370
ENSAPLT00000019806
1222 - 22036
20815