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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_16522_19760_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16522 - 19760
Intron Length:
3239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CTCGCGGCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
TGGTGGTGACCC
Flanking Amino Acid:
GHGGFLESFKRAIRVRSHSM
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
60.7
0.24
1
52.3
36.9
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
38.7
-0.8
2.5
51.46
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005197
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019806
1222 - 22036
20815
ENSAPLT00000005432
6645 - 23369
16725
ENSAPLT00000043527
6645 - 22036
15392
ENSAPLT00000021154
6645 - 23014
16370