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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_203344_210583_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
203344 - 210583
Intron Length:
7240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CTCTCCTTTACA
Flanking Amino Acid:
EMCSEFCSKKEFPLAVIRGR
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.2
31
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
85.1
0.79
0.7
79.2
26.4
Minor 5ss
35.5
-1.6
2.9
42.3
38.1
Minor BPS
69.8
0.62
1.7
75.21
42.3

Associated Gene:

Gene:
WSCD1
Ensembl Gene ID:
ENSAPLG00000006092
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039019
194618 - 216061
21444
ENSAPLT00000006322
194618 - 216061
21444