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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_20857_21299_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20857 - 21299
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATCAC
U12 Branch Point Sequence:
CCTTCCGTATCA
Flanking Amino Acid:
SSPEICPNKDRPFIKLKENG
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
60.6
0.26
1.3
65.7
41
Major PPT
76.8
0.6
0.8
69.5
36.8
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
49.9
-0
2.3
66.52
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005197
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019806
1222 - 22036
20815
ENSAPLT00000005432
6645 - 23369
16725
ENSAPLT00000043527
6645 - 22036
15392
ENSAPLT00000021154
6645 - 23014
16370