Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_212429_213236_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

212429 - 213236

Intron Length:

808

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTGCTT

5'SS Class:

major

3'SS Sequence:

TCTTGTAAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATCAT

U12 Branch Point Sequence:

TGTCTTGTAAAA

Flanking Amino Acid:

YYFDGALYNKGFKGEKDHWR

Intron Amino Acid Position:

365

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.1

66.4

44.6

Major BPS

79.4

0.73

80.1

Major PPT

67.7

0.4

1.1

63.2

Minor 5ss

35.7

-1.6

3.7

56.5

47.7

Minor BPS

47.4

-0.2

62.22

37.8

Associated Gene:

Gene:

WSCD1

Ensembl Gene ID:

ENSAPLG00000006092

Chromosome:

PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039019

194618 - 216061

21444

ENSAPLT00000006322

194618 - 216061

21444