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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_240581_240906_R

Intron Information:

Intron Rank:
144886
Intron Class:
major
Intron Phase:
Intron Coordinates:
240581 - 240906
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCAAAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCATCTTCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
60.8
0.24
1
56.8
37.2
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
57.1
0.22
1.6
65.75
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025331
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034662
240357 - 281775
41419