Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_321461_323928_F

Intron Information:

Intron Rank:

123658

Intron Class:

major

Intron Phase:

Intron Coordinates:

321461 - 323928

Intron Length:

2468

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTCCA

5'SS Class:

strong_major

3'SS Sequence:

GTTGCCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

GATCTTTCCATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

73.3

37.4

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

0.7

0.9

77.2

Minor 5ss

34.6

-1.7

2.8

39.6

39.8

Minor BPS

40.9

-0.8

1.8

42.31

36.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016682

Chromosome:

PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020128

320378 - 324023

3646