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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_324041_324306_R

Intron Information:

Intron Rank:
37117
Intron Class:
major
Intron Phase:
Intron Coordinates:
324041 - 324306
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTAGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.8
0.83
0.8
85
28.1
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
59.5
0.38
1.9
82.51
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006161
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040425
321345 - 325470
4126