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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_328908_329740_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
328908 - 329740
Intron Length:
833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGGAG
5'SS Class:
major
3'SS Sequence:
GTAAACCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTCTATTTAAAT
Flanking Amino Acid:
SYILPGVELQCLILLYRISS
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
57.4
41.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
67.7
0.4
1
58.9
42.3
Minor 5ss
26.8
-2.7
3.7
36.9
47.7
Minor BPS
66.5
0.6
1.6
82.06
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006165
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006409
328875 - 349573
20699