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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_339669_340886_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
339669 - 340886
Intron Length:
1218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGAACA
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTTCTCATCT
Flanking Amino Acid:
VLLILGVKPALLMLGFMIVT
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
67.7
37.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
36.7
-1.5
3
52
44.2
Minor BPS
59.4
0.37
1.9
79.56
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006165
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040645
329339 - 349573
20235
ENSAPLT00000006409
328875 - 349573
20699