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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_344978_345754_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
344978 - 345754
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTTATA
Flanking Amino Acid:
WANRLFPDGEKYITDSAPAV
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.8
0.98
0.5
92.8
16.7
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
60.3
0.32
1.8
75.84
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006165
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006409
328875 - 349573
20699
ENSAPLT00000040645
329339 - 349573
20235