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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_345877_346165_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
345877 - 346165
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAAA
5'SS Class:
major
3'SS Sequence:
TTTCTCACTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GGTTTCTCACTT
Flanking Amino Acid:
SMSDPEQTEEDIKKPFLPAP
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
77.8
31.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
80.8
0.69
0.7
79.2
28
Minor 5ss
41.2
-1
2.5
51
45.5
Minor BPS
50.2
0.08
1.8
69.29
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006165
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040645
329339 - 349573
20235
ENSAPLT00000006409
328875 - 349573
20699