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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_365544_367742_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
365544 - 367742
Intron Length:
2199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTAAACA
Flanking Amino Acid:
PPRTPETMITRQNVKNGGMP
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.5
0.75
0.9
81.8
33.7
Minor 5ss
38.1
-1.3
3
49.1
46.7
Minor BPS
71
0.66
1.6
82.25
33.1

Associated Gene:

Gene:
TXNDC17
Ensembl Gene ID:
ENSAPLG00000022163
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047996
365390 - 371481
6092