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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_365625_365767_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
365625 - 365767
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCCAATATGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTCTCTCCAATA
Flanking Amino Acid:
MEKALPNDTGNRLRFQ
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
27.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
64
0.31
1.1
62
42.9
Minor 5ss
36.7
-1.5
2.8
41.8
38.8
Minor BPS
52.1
0.06
1.9
67.95
39

Associated Gene:

Gene:
MED31
Ensembl Gene ID:
ENSAPLG00000025547
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035497
365606 - 367419
1814