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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_366467_367226_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
366467 - 367226
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAATCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
WKEPEYAKYLKYPQCLHMLE
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.3
0.79
0.9
78.8
38.6
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
MED31
Ensembl Gene ID:
ENSAPLG00000025547
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035497
365606 - 367419
1814
ENSAPLT00000033562
365692 - 367419
1728