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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_367829_369450_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
367829 - 369450
Intron Length:
1622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
CTTAATCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TATTACTTATCT
Flanking Amino Acid:
GVPTLLKYGTLLFLHTSILV
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
80
0.68
0.9
73.3
36.7
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
68.6
0.66
1.8
86.62
38.7

Associated Gene:

Gene:
TXNDC17
Ensembl Gene ID:
ENSAPLG00000022163
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047996
365390 - 371481
6092