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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_369527_369833_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
369527 - 369833
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TCTTCCTGAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTCCTGAACA
Flanking Amino Acid:
FIYCLVGDRAYWKDPNNEFR
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.9
31.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
72.8
0.51
1
69.3
35.6
Minor 5ss
37.9
-1.4
2.7
47.4
36.1
Minor BPS
79.3
0.92
1.3
84.45
35.5

Associated Gene:

Gene:
TXNDC17
Ensembl Gene ID:
ENSAPLG00000022163
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047996
365390 - 371481
6092