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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_369916_370782_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
369916 - 370782
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGCCG
5'SS Class:
major
3'SS Sequence:
AATTACTCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ACACTATTAACT
Flanking Amino Acid:
GKSWCPDCVTAEPVVRRELH
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
54
44.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
69.7
0.44
0.9
60
41.6
Minor 5ss
25.2
-2.9
3
22.7
36.8
Minor BPS
56.8
0.29
1.6
69.82
40.5

Associated Gene:

Gene:
TXNDC17
Ensembl Gene ID:
ENSAPLG00000022163
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047996
365390 - 371481
6092