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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_371738_372448_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
371738 - 372448
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTTT
5'SS Class:
major
3'SS Sequence:
CGCTTTGCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTCTCCTTAACA
Flanking Amino Acid:
RNEGKTLQTQLQFNRNVPAV
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74.1
36.8
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
66.5
0.37
1
61.3
39
Minor 5ss
48.8
-0.1
3.1
73.2
43.6
Minor BPS
90.5
1.27
0.9
91.36
30.2

Associated Gene:

Gene:
KIAA0753
Ensembl Gene ID:
ENSAPLG00000006528
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006789
371502 - 396860
25359