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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_373062_374333_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
373062 - 374333
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTAAGAC
5'SS Class:
major
3'SS Sequence:
TCATGCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AGATATACAACT
Flanking Amino Acid:
IQKIEELIKKERVEEILDRD
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1
60.6
31.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
76
0.59
0.9
73.5
36.8
Minor 5ss
30.7
-2.2
3.4
40.3
46.1
Minor BPS
45.2
-0.2
1.9
62.93
40.3

Associated Gene:

Gene:
KIAA0753
Ensembl Gene ID:
ENSAPLG00000006528
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046339
371502 - 389676
18175
ENSAPLT00000034434
371502 - 396757
25256
ENSAPLT00000021270
371502 - 400697
29196
ENSAPLT00000006789
371502 - 396860
25359