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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000236.1_375807_376997_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
375807 - 376997
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AAATTATAAATA
Flanking Amino Acid:
IIIDILLQIEDLDSLLEKKQ
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.3
0.59
1
71
39.2
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
47.3
-0.2
1.8
56.63
36.3

Associated Gene:

Gene:
KIAA0753
Ensembl Gene ID:
ENSAPLG00000006528
Chromosome:
PEDO01000236.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006789
371502 - 396860
25359
ENSAPLT00000046339
371502 - 389676
18175
ENSAPLT00000034434
371502 - 396757
25256
ENSAPLT00000021270
371502 - 400697
29196